J4_5J4B_026

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4B_026 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0979

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5J4B|1|2A|G|2643
5J4B|1|2A|G|2644
5J4B|1|2A|G|2645
5J4B|1|2A|C|2646
*
5J4B|1|2A|G|2674
5J4B|1|2A|A|2675
5J4B|1|2A|C|2676
*
5J4B|1|2A|G|2731
5J4B|1|2A|G|2732
5J4B|1|2A|A|2733
5J4B|1|2A|A|2734
5J4B|1|2A|G|2735
*
5J4B|1|2A|C|2769
5J4B|1|2A|G|2770
5J4B|1|2A|C|2771

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14