J4_5J4B_027

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

5J4B|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4B_027 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0588

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5J4B|1|2a|G|115
5J4B|1|2a|A|116
5J4B|1|2a|G|117
5J4B|1|2a|U|118
5J4B|1|2a|A|119
5J4B|1|2a|A|120
5J4B|1|2a|C|121
5J4B|1|2a|G|122
*
5J4B|1|2a|U|239
5J4B|1|2a|C|240
*
5J4B|1|2a|G|286
5J4B|1|2a|U|287
5J4B|1|2a|A|288
5J4B|1|2a|G|289
*
5J4B|1|2a|C|311
5J4B|1|2a|C|312

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17