J4_5J4D_001
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5J4D|1|A|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J4D_001 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.0787
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_90044.1
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J4D|1|A|G|115
5J4D|1|A|A|116
5J4D|1|A|G|117
5J4D|1|A|U|118
5J4D|1|A|A|119
5J4D|1|A|A|120
5J4D|1|A|C|121
5J4D|1|A|G|122
*
5J4D|1|A|U|239
5J4D|1|A|C|240
*
5J4D|1|A|G|286
5J4D|1|A|U|287
5J4D|1|A|A|288
5J4D|1|A|G|289
*
5J4D|1|A|C|311
5J4D|1|A|C|312
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain UA
- 30S ribosomal protein S12
- Chain YA
- 30S ribosomal protein S16
- Chain ZA
- 30S ribosomal protein S17
Coloring options: