J4_5J4D_004

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5J4D|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4D_004 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0668

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5J4D|1|B|C|268
5J4D|1|B|U|269
*
5J4D|1|B|G|370
5J4D|1|B|A|371
5J4D|1|B|G|372
5J4D|1|B|U|373
5J4D|1|B|A|374
5J4D|1|B|C|375
*
5J4D|1|B|G|399
5J4D|1|B|G|400
5J4D|1|B|A|401
5J4D|1|B|A|402
5J4D|1|B|U|403
5J4D|1|B|C|404
5J4D|1|B|U|405
5J4D|1|B|G|406
*
5J4D|1|B|U|421
5J4D|1|B|A|422
5J4D|1|B|A|423
5J4D|1|B|G|424

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L28