J4_5J4D_027

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

5J4D|1|GB|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4D_027 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0595

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

5J4D|1|GB|U|1833
5J4D|1|GB|U|1834
5J4D|1|GB|G|1835
*
5J4D|1|GB|C|1905
5J4D|1|GB|G|1906
*
5J4D|1|GB|C|1924
5J4D|1|GB|C|1925
5J4D|1|GB|U|1926
5J4D|1|GB|A|1927
5J4D|1|GB|A|1928
5J4D|1|GB|G|1929
5J4D|1|GB|G|1930
5J4D|1|GB|U|1931
5J4D|1|GB|A|1932
5J4D|1|GB|G|1933
*
5J4D|1|GB|C|1967
5J4D|1|GB|G|1968
5J4D|1|GB|A|1969
5J4D|1|GB|A|1970
5J4D|1|GB|A|1971
5J4D|1|GB|A|1972

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain JB

50S ribosomal protein L2

Chain NC

Transfer RNA; tRNA