J4_5J5B_001

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5J5B|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J5B_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.0335

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5J5B|1|AA|G|115
5J5B|1|AA|A|116
5J5B|1|AA|G|117
5J5B|1|AA|U|118
5J5B|1|AA|A|119
5J5B|1|AA|A|120
5J5B|1|AA|U|121
5J5B|1|AA|G|122
*
5J5B|1|AA|U|239
5J5B|1|AA|G|240
*
5J5B|1|AA|C|286
5J5B|1|AA|U|287
5J5B|1|AA|A|288
5J5B|1|AA|G|289
*
5J5B|1|AA|C|311
5J5B|1|AA|C|312

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17