J4_5J5B_002

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5J5B|1|AA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J5B_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0357

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5J5B|1|AA|G|142
5J5B|1|AA|A|143
5J5B|1|AA|G|144
*
5J5B|1|AA|C|178
5J5B|1|AA|A|179
5J5B|1|AA|U|180
5J5B|1|AA|A|181
5J5B|1|AA|A|182
5J5B|1|AA|C|183
5J5B|1|AA|G|184
*
5J5B|1|AA|C|193
5J5B|1|AA|C|194
5J5B|1|AA|A|195
5J5B|1|AA|A|196
5J5B|1|AA|A|197
5J5B|1|AA|G|198
*
5J5B|1|AA|U|219
5J5B|1|AA|G|220
5J5B|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20