J4_5J5B_007

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5J5B|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J5B_007 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0577

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5J5B|1|CA|C|268
5J5B|1|CA|C|269
*
5J5B|1|CA|G|370
5J5B|1|CA|A|371
5J5B|1|CA|G|372
5J5B|1|CA|U|373
5J5B|1|CA|A|374
5J5B|1|CA|G|375
*
5J5B|1|CA|U|399
5J5B|1|CA|G|400
5J5B|1|CA|A|401
5J5B|1|CA|A|402
5J5B|1|CA|U|403
5J5B|1|CA|A|404
5J5B|1|CA|U|405
5J5B|1|CA|G|406
*
5J5B|1|CA|C|421
5J5B|1|CA|A|422
5J5B|1|CA|A|423
5J5B|1|CA|G|424

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CH

50S ribosomal protein L9

Chain CY

50S ribosomal protein L28