J4_5J5B_028

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J5B_028 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.03

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5J5B|1|DA|G|2643
5J5B|1|DA|G|2644
5J5B|1|DA|G|2645
5J5B|1|DA|C|2646
*
5J5B|1|DA|G|2674
5J5B|1|DA|A|2675
5J5B|1|DA|C|2676
*
5J5B|1|DA|G|2731
5J5B|1|DA|G|2732
5J5B|1|DA|A|2733
5J5B|1|DA|A|2734
5J5B|1|DA|G|2735
*
5J5B|1|DA|U|2769
5J5B|1|DA|G|2770
5J5B|1|DA|C|2771

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DK

50S ribosomal protein L13

Chain DL

50S ribosomal protein L14