J4_5J7L_012

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

5J7L|1|CA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J7L_012 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0703

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5J7L|1|CA|U|1313
5J7L|1|CA|C|1314
*
5J7L|1|CA|G|1338
5J7L|1|CA|G|1339
5J7L|1|CA|U|1340
5J7L|1|CA|G|1341
5J7L|1|CA|A|1342
5J7L|1|CA|G|1343
*
5J7L|1|CA|C|1404
5J7L|1|CA|U|1405
*
5J7L|1|CA|A|1597
5J7L|1|CA|A|1598
5J7L|1|CA|U|1599
5J7L|1|CA|C|1600
5J7L|1|CA|G|1601
5J7L|1|CA|U|1602
5J7L|1|CA|A|1603

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CU

50S ribosomal protein L23