J4_5J7L_025

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5J7L|1|DA|A|1772
5J7L|1|DA|A|1773
5J7L|1|DA|C|1774
5J7L|1|DA|U|1775
5J7L|1|DA|G|1776
*
5J7L|1|DA|C|1788
5J7L|1|DA|A|1789
5J7L|1|DA|C|1790
5J7L|1|DA|A|1791
5J7L|1|DA|G|1792
*
5J7L|1|DA|U|1827
5J7L|1|DA|G|1828
5J7L|1|DA|A|1829
5J7L|1|DA|C|1830
*
5J7L|1|DA|G|1975
5J7L|1|DA|U|1976
5J7L|1|DA|A|1977
5J7L|1|DA|A|1978
5J7L|1|DA|U|1979

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2