J4_5J7L_027

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

5J7L|1|DA|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

5J7L|1|DA|C|2285
5J7L|1|DA|G|2286
5J7L|1|DA|A|2287
5J7L|1|DA|A|2288
5J7L|1|DA|G|2289
*
5J7L|1|DA|U|2343
5J7L|1|DA|U|2344
5J7L|1|DA|G|2345
5J7L|1|DA|A|2346
5J7L|1|DA|C|2347
*
5J7L|1|DA|G|2370
5J7L|1|DA|G|2371
5J7L|1|DA|U|2372
*
5J7L|1|DA|A|2381
5J7L|1|DA|G|2382
5J7L|1|DA|G|2383

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L33

Chain D4

50S ribosomal protein L35

Chain DP

50S ribosomal protein L18

Chain DX

50S ribosomal protein L27