Motif J4_04930.6 Version J4_04930.6 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 1-15 | 3-6 | 3-8 | 4-5 | 7-11 | 9-10 | 12-13 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8P9A_019 | 8P9A | 0.2606 | 1 | AR | LSU rRNA | C | 2654 | U | 2655 | A | 2656 | G | 2658 | * | U | 2712 | U | 2713 | G | 2714 | A | 2715 | U | 2716 | * | A | 2740 | C | 2741 | C | 2742 | * | G | 2751 | U | 2752 | G | 2753 | cWW | tWW | tHH | cWW | ncHW | cWW | cWW |
| 2 | J4_8CRE_008 | 8CRE | 0.2608 | 1 | 1 | LSU rRNA | C | 2626 | U | 2627 | A | 2628 | G | 2630 | * | U | 2684 | U | 2685 | G | 2686 | A | 2687 | U | 2688 | * | A | 2712 | C | 2713 | C | 2714 | * | G | 2723 | U | 2724 | G | 2725 | cWW | tWW | ntHH | cWW | ncHW | cWW | cWW |
| 3 | J4_4V9F_009 | 4V9F | 0.2586 | 1 | 0 | LSU rRNA | C | 2319 | U | 2320 | A | 2321 | G | 2323 | * | U | 2377 | U | 2378 | G | 2379 | A | 2380 | C | 2381 | * | G | 2407 | A | 2408 | C | 2409 | * | G | 2418 | U | 2419 | G | 2420 | cWW | tWW | tHH | cWW | cHW | cWW | cWW |
| 4 | J4_4WF9_008 | 4WF9 | 0.1739 | 1 | X | LSU rRNA | C | 2312 | A | 2313 | A | 2314 | G | 2316 | * | U | 2370 | U | 2371 | G | 2372 | A | 2373 | C | 2374 | * | G | 2397 | G | 2398 | G | 2399 | * | C | 2408 | G | 2409 | G | 2410 | cWW | cWW | cWW | cWW | |||
| 5 | J4_5J7L_027 | 5J7L | 0.1304 | 1 | DA | LSU rRNA | C | 2285 | G | 2286 | A | 2287 | G | 2289 | * | U | 2343 | U | 2344 | G | 2345 | A | 2346 | C | 2347 | * | G | 2370 | G | 2371 | U | 2372 | * | A | 2381 | G | 2382 | G | 2383 | cWW | tWW | ntHH | cWW | cHW | cWW | cWW |
| 6 | J4_9DFE_009 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | C | 2285 | A | 2286 | A | 2287 | G | 2289 | * | C | 2343 | U | 2344 | G | 2345 | A | 2346 | C | 2347 | * | G | 2370 | G | 2371 | G | 2372 | * | C | 2381 | G | 2382 | G | 2383 | cWW | tWW | tHH | cWW | cHW | cWW | cWW |
| 7 | J4_7A0S_009 | 7A0S | 0.2445 | 1 | X | LSU rRNA | C | 2264 | A | 2265 | A | 2266 | G | 2268 | * | U | 2322 | U | 2323 | G | 2324 | A | 2325 | C | 2326 | * | G | 2349 | G | 2350 | G | 2351 | * | C | 2360 | G | 2361 | G | 2362 | cWW | ncWW | cHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UUGAU*ACC*GUG | 2 |
| CAAAG*UUGAC*GGG*CGG | 2 |
| CUAUG*UUGAC*GAC*GUG | 1 |
| CGAAG*UUGAC*GGU*AGG | 1 |
| CAAAG*CUGAC*GGG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*UGA*G*G | 3 |
| UAA*UGA*C*U | 2 |
| UAU*UGA*A*U | 1 |
| GAA*UGA*G*G | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.21 | Max 0.37
Coloring options: