J4_5J88_005

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5J88|1|BA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J88_005 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0503

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5J88|1|BA|G|142
5J88|1|BA|A|143
5J88|1|BA|G|144
*
5J88|1|BA|C|178
5J88|1|BA|A|179
5J88|1|BA|U|180
5J88|1|BA|A|181
5J88|1|BA|A|182
5J88|1|BA|C|183
5J88|1|BA|G|184
*
5J88|1|BA|C|193
5J88|1|BA|C|194
5J88|1|BA|A|195
5J88|1|BA|A|196
5J88|1|BA|A|197
5J88|1|BA|G|198
*
5J88|1|BA|U|219
5J88|1|BA|G|220
5J88|1|BA|C|221

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BT

30S ribosomal protein S20