J4_5J88_010

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

5J88|1|CA|G|1271, 5J88|1|CA|A|1272, 5J88|1|CA|U|1273, 5J88|1|CA|A|1275, 5J88|1|CA|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J88_010 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0653

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5J88|1|CA|C|1270
5J88|1|CA|G|1271
5J88|1|CA|A|1272
5J88|1|CA|U|1273
5J88|1|CA|A|1274
5J88|1|CA|A|1275
5J88|1|CA|A|1276
*
5J88|1|CA|U|1294
5J88|1|CA|C|1295
*
5J88|1|CA|G|1645
5J88|1|CA|C|1646
5J88|1|CA|U|1647
5J88|1|CA|U|1648
*
5J88|1|CA|A|2009
5J88|1|CA|G|2010

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CO

50S ribosomal protein L17

Chain CT

50S ribosomal protein L22