J4_5J8A_002

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5J8A|1|AA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J8A_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0163

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5J8A|1|AA|G|142
5J8A|1|AA|A|143
5J8A|1|AA|G|144
*
5J8A|1|AA|C|178
5J8A|1|AA|A|179
5J8A|1|AA|U|180
5J8A|1|AA|A|181
5J8A|1|AA|A|182
5J8A|1|AA|C|183
5J8A|1|AA|G|184
*
5J8A|1|AA|C|193
5J8A|1|AA|C|194
5J8A|1|AA|A|195
5J8A|1|AA|A|196
5J8A|1|AA|A|197
5J8A|1|AA|G|198
*
5J8A|1|AA|U|219
5J8A|1|AA|G|220
5J8A|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20