J4_5J8A_004

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5J8A|1|BA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J8A_004 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.0374

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5J8A|1|BA|G|115
5J8A|1|BA|A|116
5J8A|1|BA|G|117
5J8A|1|BA|U|118
5J8A|1|BA|A|119
5J8A|1|BA|A|120
5J8A|1|BA|U|121
5J8A|1|BA|G|122
*
5J8A|1|BA|U|239
5J8A|1|BA|G|240
*
5J8A|1|BA|C|286
5J8A|1|BA|U|287
5J8A|1|BA|A|288
5J8A|1|BA|G|289
*
5J8A|1|BA|C|311
5J8A|1|BA|C|312

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BQ

30S ribosomal protein S17