J4_5J8A_007

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5J8A|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J8A_007 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0542

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5J8A|1|CA|C|268
5J8A|1|CA|C|269
*
5J8A|1|CA|G|370
5J8A|1|CA|A|371
5J8A|1|CA|G|372
5J8A|1|CA|U|373
5J8A|1|CA|A|374
5J8A|1|CA|G|375
*
5J8A|1|CA|U|399
5J8A|1|CA|G|400
5J8A|1|CA|A|401
5J8A|1|CA|A|402
5J8A|1|CA|U|403
5J8A|1|CA|A|404
5J8A|1|CA|U|405
5J8A|1|CA|G|406
*
5J8A|1|CA|C|421
5J8A|1|CA|A|422
5J8A|1|CA|A|423
5J8A|1|CA|G|424

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CH

50S ribosomal protein L9

Chain CY

50S ribosomal protein L28