J4_5J8A_029

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J8A_029 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0554

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5J8A|1|CA|G|2643
5J8A|1|CA|G|2644
5J8A|1|CA|G|2645
5J8A|1|CA|C|2646
*
5J8A|1|CA|G|2674
5J8A|1|CA|A|2675
5J8A|1|CA|C|2676
*
5J8A|1|CA|G|2731
5J8A|1|CA|G|2732
5J8A|1|CA|A|2733
5J8A|1|CA|A|2734
5J8A|1|CA|G|2735
*
5J8A|1|CA|U|2769
5J8A|1|CA|G|2770
5J8A|1|CA|C|2771

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CK

50S ribosomal protein L13

Chain CL

50S ribosomal protein L14