J4_5J8B_003
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 5J8B|1|A|G|1316, 5J8B|1|A|A|1317, 5J8B|1|A|U|1318, 5J8B|1|A|G|1693
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J8B_003 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.0538
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J8B|1|A|C|1315
5J8B|1|A|G|1316
5J8B|1|A|A|1317
5J8B|1|A|U|1318
5J8B|1|A|A|1319
5J8B|1|A|A|1320
5J8B|1|A|A|1321
*
5J8B|1|A|U|1339
5J8B|1|A|C|1340
*
5J8B|1|A|G|1691
5J8B|1|A|C|1692
5J8B|1|A|G|1693
5J8B|1|A|C|1694
*
5J8B|1|A|G|2030
5J8B|1|A|G|2031
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain R
- 50S ribosomal protein L17
- Chain W
- 50S ribosomal protein L22
Coloring options: