3D structure

PDB id
5J8B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
5J8B|1|A|A|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5J8B_008 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.061
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_42306.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
5

Unit IDs

5J8B|1|A|U|1863
5J8B|1|A|U|1864
5J8B|1|A|G|1865
*
5J8B|1|A|C|1926
5J8B|1|A|G|1927
*
5J8B|1|A|C|1945
5J8B|1|A|C|1946
5J8B|1|A|U|1947
5J8B|1|A|A|1948
5J8B|1|A|A|1949
5J8B|1|A|G|1950
5J8B|1|A|G|1951
5J8B|1|A|U|1952
5J8B|1|A|A|1953
5J8B|1|A|G|1954
*
5J8B|1|A|C|1988
5J8B|1|A|G|1989
5J8B|1|A|A|1990
5J8B|1|A|A|1991
5J8B|1|A|A|1992
5J8B|1|A|A|1993

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain x
Transfer RNA; tRNA

Coloring options:


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