J4_5J8B_015
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5J8B|1|x|4SU|8, 5J8B|1|x|U|47, 5J8B|1|x|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J8B_015 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.1596
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
5J8B|1|x|G|7
5J8B|1|x|4SU|8
5J8B|1|x|G|9
5J8B|1|x|G|10
*
5J8B|1|x|C|25
5J8B|1|x|G|26
5J8B|1|x|U|27
*
5J8B|1|x|A|43
5J8B|1|x|A|44
5J8B|1|x|G|45
5J8B|1|x|G|46
5J8B|1|x|U|47
5J8B|1|x|C|48
5J8B|1|x|G|49
*
5J8B|1|x|C|65
5J8B|1|x|C|66
Current chains
- Chain x
- P-site tRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L27
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
- Chain w
- Transfer RNA; tRNA
Coloring options: