J4_5J91_005

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5J91|1|BA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J91_005 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0359

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5J91|1|BA|G|142
5J91|1|BA|A|143
5J91|1|BA|G|144
*
5J91|1|BA|C|178
5J91|1|BA|A|179
5J91|1|BA|U|180
5J91|1|BA|A|181
5J91|1|BA|A|182
5J91|1|BA|C|183
5J91|1|BA|G|184
*
5J91|1|BA|C|193
5J91|1|BA|C|194
5J91|1|BA|A|195
5J91|1|BA|A|196
5J91|1|BA|A|197
5J91|1|BA|G|198
*
5J91|1|BA|U|219
5J91|1|BA|G|220
5J91|1|BA|C|221

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BT

30S ribosomal protein S20