J4_5J91_007

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5J91|1|CA|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J91_007 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0577

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5J91|1|CA|C|268
5J91|1|CA|C|269
*
5J91|1|CA|G|370
5J91|1|CA|A|371
5J91|1|CA|G|372
5J91|1|CA|U|373
5J91|1|CA|A|374
5J91|1|CA|G|375
*
5J91|1|CA|U|399
5J91|1|CA|G|400
5J91|1|CA|A|401
5J91|1|CA|A|402
5J91|1|CA|U|403
5J91|1|CA|A|404
5J91|1|CA|U|405
5J91|1|CA|G|406
*
5J91|1|CA|C|421
5J91|1|CA|A|422
5J91|1|CA|A|423
5J91|1|CA|G|424

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CH

50S ribosomal protein L9

Chain CY

50S ribosomal protein L28