J4_5JB3_001

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

CAGUAACAC*GGC*GUAC*GG

Length

18 nucleotides

Bulged bases

5JB3|1|2|C|105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|C|99
5JB3|1|2|A|100
5JB3|1|2|G|101
5JB3|1|2|U|102
5JB3|1|2|A|103
5JB3|1|2|A|104
5JB3|1|2|C|105
5JB3|1|2|A|106
5JB3|1|2|C|107
*
5JB3|1|2|G|234
5JB3|1|2|G|235
5JB3|1|2|C|236
*
5JB3|1|2|G|282
5JB3|1|2|U|283
5JB3|1|2|A|284
5JB3|1|2|C|285
*
5JB3|1|2|G|307
5JB3|1|2|G|308

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain J

30S ribosomal protein S8e

Chain N

30S ribosomal protein S12

Chain R

30S ribosomal protein S17P