J4_5JB3_002

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GAG*CAUAG*CGAAAG*CGC

Length

17 nucleotides

Bulged bases

5JB3|1|2|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JB3|1|2|G|127
5JB3|1|2|A|128
5JB3|1|2|G|129
*
5JB3|1|2|C|163
5JB3|1|2|A|164
5JB3|1|2|U|165
5JB3|1|2|A|166
5JB3|1|2|G|167
*
5JB3|1|2|C|195
5JB3|1|2|G|196
5JB3|1|2|A|197
5JB3|1|2|A|198
5JB3|1|2|A|199
5JB3|1|2|G|200
*
5JB3|1|2|C|215
5JB3|1|2|G|216
5JB3|1|2|C|217

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain J

30S ribosomal protein S8e