J4_5JB3_004

3D structure

PDB id

5JB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.34 Å

Loop

Sequence

GUGG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

5JB3|1|4|U|8, 5JB3|1|4|U|47, 5JB3|1|4|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JB3_004 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.2054

The information below is about J4_6CFJ_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5JB3|1|4|G|7
5JB3|1|4|U|8
5JB3|1|4|G|9
5JB3|1|4|G|10
*
5JB3|1|4|C|25
5JB3|1|4|G|26
5JB3|1|4|U|27
*
5JB3|1|4|A|43
5JB3|1|4|A|44
5JB3|1|4|G|45
5JB3|1|4|A|46
5JB3|1|4|U|47
5JB3|1|4|C|48
5JB3|1|4|G|49
*
5JB3|1|4|C|65
5JB3|1|4|C|66

Current chains

Chain 4

initiator Met-tRNA fMet from E. coli (A1U72 variant)

Nearby chains

Chain 8

Translation initiation factor 2 subunit beta