J4_5JBH_003
3D structure
- PDB id
- 5JBH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.34 Å
Loop
- Sequence
- CCUAAAGCGG*CGGAAGG*CUGUAAAGGAUG*CCG
- Length
- 32 nucleotides
- Bulged bases
- 5JBH|1|2|A|525, 5JBH|1|2|C|529, 5JBH|1|2|A|769
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JBH|1|2|C|522
5JBH|1|2|C|523
5JBH|1|2|U|524
5JBH|1|2|A|525
5JBH|1|2|A|526
5JBH|1|2|A|527
5JBH|1|2|G|528
5JBH|1|2|C|529
5JBH|1|2|G|530
5JBH|1|2|G|531
*
5JBH|1|2|C|717
5JBH|1|2|G|718
5JBH|1|2|G|719
5JBH|1|2|A|720
5JBH|1|2|A|721
5JBH|1|2|G|722
5JBH|1|2|G|723
*
5JBH|1|2|C|764
5JBH|1|2|U|765
5JBH|1|2|G|766
5JBH|1|2|U|767
5JBH|1|2|A|768
5JBH|1|2|A|769
5JBH|1|2|A|770
5JBH|1|2|G|771
5JBH|1|2|G|772
5JBH|1|2|A|773
5JBH|1|2|U|774
5JBH|1|2|G|775
*
5JBH|1|2|C|837
5JBH|1|2|C|838
5JBH|1|2|G|839
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 0
- 30S ribosomal protein eL41
- Chain I
- 30S ribosomal protein uS8
- Chain M
- 30S ribosomal protein uS11
- Chain N
- 30S ribosomal protein uS12
- Chain Q
- 30S ribosomal protein uS15
- Chain R
- 30S ribosomal protein uS17
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