J4_5JBH_004
3D structure
- PDB id
- 5JBH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.34 Å
Loop
- Sequence
- GUGG*CGUC*GAAGAUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 5JBH|1|4|U|8, 5JBH|1|4|U|48, 5JBH|1|4|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JBH_004 not in the Motif Atlas
- Homologous match to J4_4V90_004
- Geometric discrepancy: 0.2955
- The information below is about J4_4V90_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_94519.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JBH|1|4|G|7
5JBH|1|4|U|8
5JBH|1|4|G|9
5JBH|1|4|G|10
*
5JBH|1|4|C|26
5JBH|1|4|G|27
5JBH|1|4|U|28
5JBH|1|4|C|29
*
5JBH|1|4|G|43
5JBH|1|4|A|44
5JBH|1|4|A|45
5JBH|1|4|G|46
5JBH|1|4|A|47
5JBH|1|4|U|48
5JBH|1|4|C|49
5JBH|1|4|G|50
*
5JBH|1|4|C|66
5JBH|1|4|C|67
Current chains
- Chain 4
- initiator Met-tRNA fMet from E. coli (A1U72 variant)
Nearby chains
- Chain 1
- aIF1
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- 30S ribosomal protein uS13
Coloring options: