J4_5JC9_004

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5JC9|1|BA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JC9_004 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.052

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5JC9|1|BA|G|115
5JC9|1|BA|A|116
5JC9|1|BA|G|117
5JC9|1|BA|U|118
5JC9|1|BA|A|119
5JC9|1|BA|A|120
5JC9|1|BA|U|121
5JC9|1|BA|G|122
*
5JC9|1|BA|U|239
5JC9|1|BA|G|240
*
5JC9|1|BA|C|286
5JC9|1|BA|U|287
5JC9|1|BA|A|288
5JC9|1|BA|G|289
*
5JC9|1|BA|C|311
5JC9|1|BA|C|312

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BQ

30S ribosomal protein S17