J4_5JC9_007

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5JC9|1|CA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JC9_007 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.063

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5JC9|1|CA|C|268
5JC9|1|CA|C|269
*
5JC9|1|CA|G|370
5JC9|1|CA|A|371
5JC9|1|CA|G|372
5JC9|1|CA|U|373
5JC9|1|CA|A|374
5JC9|1|CA|G|375
*
5JC9|1|CA|U|399
5JC9|1|CA|G|400
5JC9|1|CA|A|401
5JC9|1|CA|A|402
5JC9|1|CA|U|403
5JC9|1|CA|A|404
5JC9|1|CA|U|405
5JC9|1|CA|G|406
*
5JC9|1|CA|C|421
5JC9|1|CA|A|422
5JC9|1|CA|A|423
5JC9|1|CA|G|424

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CH

50S ribosomal protein L9

Chain CY

50S ribosomal protein L28