Loop J4_5JCS

3D structure

PDB id: 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
Description: CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.5 Å

Loop

Sequence: GCGGGGAAAGAAGACCCUGUUGAG*UACCACAGGGAUAACUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCUCUU*GAACGUGAGCUGGGUUUAGACCG*CAGGUUAGUUUUACCCUAC
Length: 143 nucleotides
Bulged bases: 5JCS|1|x|A|2397, 5JCS|1|x|G|2403, 5JCS|1|x|A|2404, 5JCS|1|x|C|2405, 5JCS|1|x|C|2406, 5JCS|1|x|U|2410, 5JCS|1|x|G|2816, 5JCS|1|x|A|2817, 5JCS|1|x|U|2818, 5JCS|1|x|C|2821, 5JCS|1|x|U|2822, 5JCS|1|x|G|2824, 5JCS|1|x|U|2860, 5JCS|1|x|U|2861, 5JCS|1|x|U|2862, 5JCS|1|x|G|2863, 5JCS|1|x|A|2864, 5JCS|1|x|C|2870, 5JCS|1|x|G|2874, 5JCS|1|x|C|2876, 5JCS|1|x|A|2941, 5JCS|1|x|C|2942, 5JCS|1|x|G|2945, 5JCS|1|x|U|2954, 5JCS|1|x|A|2971, 5JCS|1|x|U|2978, 5JCS|1|x|U|2979, 5JCS|1|x|C|2983
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5JCS|1|x|G|2391
5JCS|1|x|C|2392
5JCS|1|x|G|2393
5JCS|1|x|G|2394
5JCS|1|x|G|2395
5JCS|1|x|G|2396
5JCS|1|x|A|2397
5JCS|1|x|A|2398
5JCS|1|x|A|2399
5JCS|1|x|G|2400
5JCS|1|x|A|2401
5JCS|1|x|A|2402
5JCS|1|x|G|2403
5JCS|1|x|A|2404
5JCS|1|x|C|2405
5JCS|1|x|C|2406
5JCS|1|x|C|2407
5JCS|1|x|U|2408
5JCS|1|x|G|2409
5JCS|1|x|U|2410
5JCS|1|x|U|2411
5JCS|1|x|G|2412
5JCS|1|x|A|2413
5JCS|1|x|G|2414
*
5JCS|1|x|U|2807
5JCS|1|x|A|2808
5JCS|1|x|C|2809
5JCS|1|x|C|2810
5JCS|1|x|A|2811
5JCS|1|x|C|2812
5JCS|1|x|A|2813
5JCS|1|x|G|2814
5JCS|1|x|G|2815
5JCS|1|x|G|2816
5JCS|1|x|A|2817
5JCS|1|x|U|2818
5JCS|1|x|A|2819
5JCS|1|x|A|2820
5JCS|1|x|C|2821
5JCS|1|x|U|2822
5JCS|1|x|G|2823
5JCS|1|x|G|2824
5JCS|1|x|C|2825
5JCS|1|x|U|2826
5JCS|1|x|U|2827
5JCS|1|x|G|2828
5JCS|1|x|U|2829
5JCS|1|x|G|2830
5JCS|1|x|G|2831
5JCS|1|x|C|2832
5JCS|1|x|A|2833
5JCS|1|x|G|2834
5JCS|1|x|U|2835
5JCS|1|x|C|2836
5JCS|1|x|A|2837
5JCS|1|x|A|2838
5JCS|1|x|G|2839
5JCS|1|x|C|2840
5JCS|1|x|G|2841
5JCS|1|x|U|2842
5JCS|1|x|U|2843
5JCS|1|x|C|2844
5JCS|1|x|A|2845
5JCS|1|x|U|2846
5JCS|1|x|A|2847
5JCS|1|x|G|2848
5JCS|1|x|C|2849
5JCS|1|x|G|2850
5JCS|1|x|A|2851
5JCS|1|x|C|2852
5JCS|1|x|A|2853
5JCS|1|x|U|2854
5JCS|1|x|U|2855
5JCS|1|x|G|2856
5JCS|1|x|C|2857
5JCS|1|x|U|2858
5JCS|1|x|U|2859
5JCS|1|x|U|2860
5JCS|1|x|U|2861
5JCS|1|x|U|2862
5JCS|1|x|G|2863
5JCS|1|x|A|2864
5JCS|1|x|U|2865
5JCS|1|x|U|2866
5JCS|1|x|C|2867
5JCS|1|x|U|2868
5JCS|1|x|U|2869
5JCS|1|x|C|2870
5JCS|1|x|G|2871
5JCS|1|x|A|2872
5JCS|1|x|U|2873
5JCS|1|x|G|2874
5JCS|1|x|U|2875
5JCS|1|x|C|2876
5JCS|1|x|G|2877
5JCS|1|x|G|2878
5JCS|1|x|C|2879
5JCS|1|x|U|2880
5JCS|1|x|C|2881
5JCS|1|x|U|2882
5JCS|1|x|U|2883
*
5JCS|1|x|G|2939
5JCS|1|x|A|2940
5JCS|1|x|A|2941
5JCS|1|x|C|2942
5JCS|1|x|G|2943
5JCS|1|x|U|2944
5JCS|1|x|G|2945
5JCS|1|x|A|2946
5JCS|1|x|G|2947
5JCS|1|x|C|2948
5JCS|1|x|U|2949
5JCS|1|x|G|2950
5JCS|1|x|G|2951
5JCS|1|x|G|2952
5JCS|1|x|U|2953
5JCS|1|x|U|2954
5JCS|1|x|U|2955
5JCS|1|x|A|2956
5JCS|1|x|G|2957
5JCS|1|x|A|2958
5JCS|1|x|C|2959
5JCS|1|x|C|2960
5JCS|1|x|G|2961
*
5JCS|1|x|C|2970
5JCS|1|x|A|2971
5JCS|1|x|G|2972
5JCS|1|x|G|2973
5JCS|1|x|U|2974
5JCS|1|x|U|2975
5JCS|1|x|A|2976
5JCS|1|x|G|2977
5JCS|1|x|U|2978
5JCS|1|x|U|2979
5JCS|1|x|U|2980
5JCS|1|x|U|2981
5JCS|1|x|A|2982
5JCS|1|x|C|2983
5JCS|1|x|C|2984
5JCS|1|x|C|2985
5JCS|1|x|U|2986
5JCS|1|x|A|2987
5JCS|1|x|C|2988

Current chains

Chain x: 25S ribosomal RNA

Nearby chains

Chain A: 60S ribosomal protein L2-A
Chain B: 60S ribosomal protein L3
Chain C: 60S ribosomal protein L4-A
Chain O: 60S ribosomal protein L16-A
Chain P: 60S ribosomal protein L17-A
Chain S: 60S ribosomal protein L20-A
Chain T: 60S ribosomal protein L21-A
Chain V: 60S ribosomal protein L23-A
Chain a: 60S ribosomal protein L28
Chain o: Nucleolar GTP-binding protein 1
Chain q: Ribosome assembly protein 4
Chain z: 5S ribosomal RNA; 5S rRNA

J4_5JCS_001