J4_5JCS_002

3D structure

PDB id

5JCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CAAUAGUAAUU*AUUCGGA*UCCGCUGG*CAUGCUAGAACG

Length

38 nucleotides

Bulged bases

5JCS|1|x|A|3011, 5JCS|1|x|A|3142, 5JCS|1|x|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JCS|1|x|C|3004
5JCS|1|x|A|3005
5JCS|1|x|A|3006
5JCS|1|x|U|3007
5JCS|1|x|A|3008
5JCS|1|x|G|3009
5JCS|1|x|U|3010
5JCS|1|x|A|3011
5JCS|1|x|A|3012
5JCS|1|x|U|3013
5JCS|1|x|U|3014
*
5JCS|1|x|A|3040
5JCS|1|x|U|3041
5JCS|1|x|U|3042
5JCS|1|x|C|3043
5JCS|1|x|G|3044
5JCS|1|x|G|3045
5JCS|1|x|A|3046
*
5JCS|1|x|U|3095
5JCS|1|x|C|3096
5JCS|1|x|C|3097
5JCS|1|x|G|3098
5JCS|1|x|C|3099
5JCS|1|x|U|3100
5JCS|1|x|G|3101
5JCS|1|x|G|3102
*
5JCS|1|x|C|3133
5JCS|1|x|A|3134
5JCS|1|x|U|3135
5JCS|1|x|G|3136
5JCS|1|x|C|3137
5JCS|1|x|U|3138
5JCS|1|x|A|3139
5JCS|1|x|G|3140
5JCS|1|x|A|3141
5JCS|1|x|A|3142
5JCS|1|x|C|3143
5JCS|1|x|G|3144

Current chains

Chain x

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A

Chain V

60S ribosomal protein L23-A