J4_5JTE_001

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5JTE|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JTE_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.131

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5JTE|1|AA|G|115
5JTE|1|AA|A|116
5JTE|1|AA|G|117
5JTE|1|AA|U|118
5JTE|1|AA|A|119
5JTE|1|AA|A|120
5JTE|1|AA|U|121
5JTE|1|AA|G|122
*
5JTE|1|AA|U|239
5JTE|1|AA|G|240
*
5JTE|1|AA|C|286
5JTE|1|AA|U|287
5JTE|1|AA|A|288
5JTE|1|AA|G|289
*
5JTE|1|AA|C|311
5JTE|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17