J4_5JTE_004

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

U(4SU)AG*CA*UG(7MG)(3AU)CG*CA

Length

14 nucleotides

Bulged bases

5JTE|1|AW|4SU|8, 5JTE|1|AW|3AU|47, 5JTE|1|AW|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JTE_004 not in the Motif Atlas

Homologous match to J4_4QEI_001

Geometric discrepancy: 0.4772

The information below is about J4_4QEI_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_72305.5

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

5JTE|1|AW|U|7
5JTE|1|AW|4SU|8
5JTE|1|AW|A|9
5JTE|1|AW|G|10
*
5JTE|1|AW|C|25
5JTE|1|AW|A|26
*
5JTE|1|AW|U|44
5JTE|1|AW|G|45
5JTE|1|AW|7MG|46
5JTE|1|AW|3AU|47
5JTE|1|AW|C|48
5JTE|1|AW|G|49
*
5JTE|1|AW|C|65
5JTE|1|AW|A|66

Current chains

Chain AW

A-site Lysine tRNA Lysine

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA