J4_5JTE_007

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5JTE|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JTE_007 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1133

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5JTE|1|BA|C|268
5JTE|1|BA|C|269
*
5JTE|1|BA|G|370
5JTE|1|BA|A|371
5JTE|1|BA|G|372
5JTE|1|BA|U|373
5JTE|1|BA|A|374
5JTE|1|BA|G|375
*
5JTE|1|BA|U|399
5JTE|1|BA|G|400
5JTE|1|BA|A|401
5JTE|1|BA|A|402
5JTE|1|BA|U|403
5JTE|1|BA|A|404
5JTE|1|BA|U|405
5JTE|1|BA|G|406
*
5JTE|1|BA|C|421
5JTE|1|BA|A|422
5JTE|1|BA|A|423
5JTE|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28