J4_5JU8_002

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5JU8|1|AA|C|183, 5JU8|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JU8_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1581

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5JU8|1|AA|G|142
5JU8|1|AA|A|143
5JU8|1|AA|G|144
*
5JU8|1|AA|C|178
5JU8|1|AA|A|179
5JU8|1|AA|U|180
5JU8|1|AA|A|181
5JU8|1|AA|A|182
5JU8|1|AA|C|183
5JU8|1|AA|G|184
*
5JU8|1|AA|C|193
5JU8|1|AA|C|194
5JU8|1|AA|A|195
5JU8|1|AA|A|196
5JU8|1|AA|A|197
5JU8|1|AA|G|198
*
5JU8|1|AA|U|219
5JU8|1|AA|G|220
5JU8|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20