J4_5JU8_005

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

U(4SU)AG*CAC*GGG(7MG)UCG*CA

Length

16 nucleotides

Bulged bases

5JU8|1|AY|4SU|8, 5JU8|1|AY|U|47, 5JU8|1|AY|C|48

QA status

Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JU8_005 not in the Motif Atlas

Homologous match to J4_3WQY_001

Geometric discrepancy: 0.2656

The information below is about J4_3WQY_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

5JU8|1|AY|U|7
5JU8|1|AY|4SU|8
5JU8|1|AY|A|9
5JU8|1|AY|G|10
*
5JU8|1|AY|C|25
5JU8|1|AY|A|26
5JU8|1|AY|C|27
*
5JU8|1|AY|G|43
5JU8|1|AY|G|44
5JU8|1|AY|G|45
5JU8|1|AY|7MG|46
5JU8|1|AY|U|47
5JU8|1|AY|C|48
5JU8|1|AY|G|49
*
5JU8|1|AY|C|65
5JU8|1|AY|A|66

Current chains

Chain AY

E-site tRNA Valine

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AG

30S ribosomal protein S7

Chain B1

50S ribosomal protein L33