J4_5JU8_006

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5JU8|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JU8_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1136

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5JU8|1|BA|C|268
5JU8|1|BA|C|269
*
5JU8|1|BA|G|370
5JU8|1|BA|A|371
5JU8|1|BA|G|372
5JU8|1|BA|U|373
5JU8|1|BA|A|374
5JU8|1|BA|G|375
*
5JU8|1|BA|U|399
5JU8|1|BA|G|400
5JU8|1|BA|A|401
5JU8|1|BA|A|402
5JU8|1|BA|U|403
5JU8|1|BA|A|404
5JU8|1|BA|U|405
5JU8|1|BA|G|406
*
5JU8|1|BA|C|421
5JU8|1|BA|A|422
5JU8|1|BA|A|423
5JU8|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28