J4_5JU8_016
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 5JU8|1|BA|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JU8_016 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.1085
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5JU8|1|BA|U|1313
5JU8|1|BA|C|1314
*
5JU8|1|BA|G|1338
5JU8|1|BA|G|1339
5JU8|1|BA|U|1340
5JU8|1|BA|G|1341
5JU8|1|BA|A|1342
5JU8|1|BA|G|1343
*
5JU8|1|BA|C|1404
5JU8|1|BA|U|1405
*
5JU8|1|BA|A|1597
5JU8|1|BA|A|1598
5JU8|1|BA|U|1599
5JU8|1|BA|C|1600
5JU8|1|BA|G|1601
5JU8|1|BA|U|1602
5JU8|1|BA|A|1603
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L34
- Chain BT
- 50S ribosomal protein L23
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