J4_5JUO_005
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAGAUGAAAAG*CG*CUCUUG
- Length
- 39 nucleotides
- Bulged bases
- 5JUO|1|B|U|343, 5JUO|1|B|A|351, 5JUO|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUO|1|B|C|340
5JUO|1|B|G|341
5JUO|1|B|A|342
5JUO|1|B|U|343
5JUO|1|B|A|344
5JUO|1|B|G|345
5JUO|1|B|C|346
5JUO|1|B|G|347
5JUO|1|B|A|348
5JUO|1|B|A|349
5JUO|1|B|C|350
5JUO|1|B|A|351
5JUO|1|B|A|352
5JUO|1|B|G|353
5JUO|1|B|U|354
5JUO|1|B|A|355
5JUO|1|B|C|356
*
5JUO|1|B|G|363
5JUO|1|B|G|364
5JUO|1|B|A|365
5JUO|1|B|A|366
5JUO|1|B|A|367
5JUO|1|B|G|368
5JUO|1|B|A|369
5JUO|1|B|U|370
5JUO|1|B|G|371
5JUO|1|B|A|372
5JUO|1|B|A|373
5JUO|1|B|A|374
5JUO|1|B|A|375
5JUO|1|B|G|376
*
5JUO|1|B|C|403
5JUO|1|B|G|404
*
5JUO|1|C|C|19
5JUO|1|C|U|20
5JUO|1|C|C|21
5JUO|1|C|U|22
5JUO|1|C|U|23
5JUO|1|C|G|24
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
- Chain U
- uL22 (yeast L17)
Coloring options: