J4_5JUO_007
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGAAGUGGGGAAA*UGAUAAC*GUCUCCAA*UCUA
- Length
- 32 nucleotides
- Bulged bases
- 5JUO|1|B|A|1482, 5JUO|1|B|U|1484, 5JUO|1|B|U|1840, 5JUO|1|B|A|1841, 5JUO|1|B|A|1842, 5JUO|1|B|A|1858
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUO|1|B|U|1479
5JUO|1|B|G|1480
5JUO|1|B|A|1481
5JUO|1|B|A|1482
5JUO|1|B|G|1483
5JUO|1|B|U|1484
5JUO|1|B|G|1485
5JUO|1|B|G|1486
5JUO|1|B|G|1487
5JUO|1|B|G|1488
5JUO|1|B|A|1489
5JUO|1|B|A|1490
5JUO|1|B|A|1491
*
5JUO|1|B|U|1837
5JUO|1|B|G|1838
5JUO|1|B|A|1839
5JUO|1|B|U|1840
5JUO|1|B|A|1841
5JUO|1|B|A|1842
5JUO|1|B|C|1843
*
5JUO|1|B|G|1852
5JUO|1|B|U|1853
5JUO|1|B|C|1854
5JUO|1|B|U|1855
5JUO|1|B|C|1856
5JUO|1|B|C|1857
5JUO|1|B|A|1858
5JUO|1|B|A|1859
*
5JUO|1|B|U|1871
5JUO|1|B|C|1872
5JUO|1|B|U|1873
5JUO|1|B|A|1874
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- eL34 (yeast L34)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
- Chain W
- eL19 (yeast L19)
Coloring options: