J4_5JUO_008

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAUC*GGAAUCC*GGAACC*GGUCG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|C|1527
5JUO|1|B|G|1528
5JUO|1|B|A|1529
5JUO|1|B|U|1530
5JUO|1|B|C|1531
*
5JUO|1|B|G|1591
5JUO|1|B|G|1592
5JUO|1|B|A|1593
5JUO|1|B|A|1594
5JUO|1|B|U|1595
5JUO|1|B|C|1596
5JUO|1|B|C|1597
*
5JUO|1|B|G|1610
5JUO|1|B|G|1611
5JUO|1|B|A|1612
5JUO|1|B|A|1613
5JUO|1|B|C|1614
5JUO|1|B|C|1615
*
5JUO|1|B|G|1829
5JUO|1|B|G|1830
5JUO|1|B|U|1831
5JUO|1|B|C|1832
5JUO|1|B|G|1833

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain CA

uL23 (yeast L25)

Chain LA

eL34 (yeast L34)

Chain PA

eL38 (yeast L38)

Chain QA

eL39 (yeast L39)