J4_5JUO_012
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 5JUO|1|B|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUO_012 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1965
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUO|1|B|C|2654
5JUO|1|B|U|2655
5JUO|1|B|A|2656
5JUO|1|B|A|2657
5JUO|1|B|G|2658
*
5JUO|1|B|U|2712
5JUO|1|B|U|2713
5JUO|1|B|G|2714
5JUO|1|B|A|2715
5JUO|1|B|U|2716
*
5JUO|1|B|A|2740
5JUO|1|B|C|2741
5JUO|1|B|C|2742
*
5JUO|1|B|G|2751
5JUO|1|B|U|2752
5JUO|1|B|G|2753
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain GA
- eL29 (yeast L29)
- Chain I
- uL18 (yeast L5)
- Chain TA
- eL42 (yeast L42)
- Chain Y
- eL21 (yeast L21)
Coloring options: