J4_5JUO_013

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAAUU*AUUC*GCU*AUG

Length

15 nucleotides

Bulged bases

5JUO|1|B|A|3011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|B|U|3010
5JUO|1|B|A|3011
5JUO|1|B|A|3012
5JUO|1|B|U|3013
5JUO|1|B|U|3014
*
5JUO|1|B|A|3040
5JUO|1|B|U|3041
5JUO|1|B|U|3042
5JUO|1|B|C|3043
*
5JUO|1|B|G|3098
5JUO|1|B|C|3099
5JUO|1|B|U|3100
*
5JUO|1|B|A|3134
5JUO|1|B|U|3135
5JUO|1|B|G|3136

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain AA

uL14 (yeast L23)

Chain G

uL3 (yeast L3)

Chain T

uL13 (yeast L16)