J4_5JUP_004

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAAUAU*AGA*UUGAU*AG

Length

17 nucleotides

Bulged bases

5JUP|1|B|A|1452, 5JUP|1|B|U|1455, 5JUP|1|B|A|1456, 5JUP|1|B|U|1877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUP|1|B|C|1451
5JUP|1|B|A|1452
5JUP|1|B|A|1453
5JUP|1|B|A|1454
5JUP|1|B|U|1455
5JUP|1|B|A|1456
5JUP|1|B|U|1457
*
5JUP|1|B|A|1475
5JUP|1|B|G|1476
5JUP|1|B|A|1477
*
5JUP|1|B|U|1876
5JUP|1|B|U|1877
5JUP|1|B|G|1878
5JUP|1|B|A|1879
5JUP|1|B|U|1880
*
5JUP|1|B|A|2352
5JUP|1|B|G|2353

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain IA

eL31 (yeast L31)

Chain U

uL22 (yeast L17)

Chain W

eL19 (yeast L19)