J4_5JUS_004
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAAAUAU*AGAC*GUUGAU*AG
- Length
- 19 nucleotides
- Bulged bases
- 5JUS|1|B|A|1452, 5JUS|1|B|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUS|1|B|C|1451
5JUS|1|B|A|1452
5JUS|1|B|A|1453
5JUS|1|B|A|1454
5JUS|1|B|U|1455
5JUS|1|B|A|1456
5JUS|1|B|U|1457
*
5JUS|1|B|A|1475
5JUS|1|B|G|1476
5JUS|1|B|A|1477
5JUS|1|B|C|1478
*
5JUS|1|B|G|1875
5JUS|1|B|U|1876
5JUS|1|B|U|1877
5JUS|1|B|G|1878
5JUS|1|B|A|1879
5JUS|1|B|U|1880
*
5JUS|1|B|A|2352
5JUS|1|B|G|2353
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain IA
- eL31 (yeast L31)
- Chain U
- uL22 (yeast L17)
- Chain W
- eL19 (yeast L19)
Coloring options: