J4_5JUT_001
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5JUT|1|A|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUT_001 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1249
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUT|1|A|C|99
5JUT|1|A|A|100
5JUT|1|A|U|101
5JUT|1|A|U|102
5JUT|1|A|A|103
5JUT|1|A|A|104
5JUT|1|A|A|105
5JUT|1|A|U|106
5JUT|1|A|C|107
*
5JUT|1|A|G|307
5JUT|1|A|C|308
5JUT|1|A|C|309
*
5JUT|1|A|G|357
5JUT|1|A|U|358
5JUT|1|A|A|359
5JUT|1|A|A|360
5JUT|1|A|C|361
*
5JUT|1|A|G|383
5JUT|1|A|G|384
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BB
- eS4 (yeast S4)
- Chain FB
- eS8 (yeast S8)
- Chain IB
- uS17 (yeast S11)
- Chain UB
- uS12 (yeast S23)
Coloring options: