J4_5JUT_011
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5JUT|1|B|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5JUT_011 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1798
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUT|1|B|C|2192
5JUT|1|B|U|2193
5JUT|1|B|G|2194
*
5JUT|1|B|C|2248
5JUT|1|B|G|2249
*
5JUT|1|B|C|2267
5JUT|1|B|U|2268
5JUT|1|B|U|2269
5JUT|1|B|A|2270
5JUT|1|B|A|2271
5JUT|1|B|G|2272
5JUT|1|B|G|2273
5JUT|1|B|U|2274
5JUT|1|B|A|2275
5JUT|1|B|G|2276
*
5JUT|1|B|U|2310
5JUT|1|B|G|2311
5JUT|1|B|A|2312
5JUT|1|B|A|2313
5JUT|1|B|U|2314
5JUT|1|B|G|2315
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain EC
- IRES
- Chain F
- uL2 (yeast L2)
- Chain SA
- eL41 (yeast L41)
Coloring options: