J4_5JUU_003

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

5JUU|1|B|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JUU_003 not in the Motif Atlas

Homologous match to J4_8P9A_012

Geometric discrepancy: 0.1656

The information below is about J4_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5JUU|1|B|U|112
5JUU|1|B|C|113
*
5JUU|1|B|G|267
5JUU|1|B|A|268
5JUU|1|B|G|269
5JUU|1|B|U|270
5JUU|1|B|C|271
5JUU|1|B|G|272
*
5JUU|1|B|C|293
5JUU|1|B|U|294
5JUU|1|B|A|295
5JUU|1|B|A|296
5JUU|1|B|G|297
5JUU|1|B|U|298
5JUU|1|B|G|299
*
5JUU|1|B|U|316
5JUU|1|B|A|317
5JUU|1|B|A|318
5JUU|1|B|A|319

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain MA

uL29 (yeast L35)

Chain NA

eL36 (yeast L36)

Chain Q

eL13 (yeast L13)

Chain S

eL15 (yeast L15)